Startup Accounting & Bookkeeping Services UK: The Complete Operating Guide
Jan 19, 2026 | By Team SR
Running a UK startup means juggling product development, customer acquisition, and team building—while staying compliant with HMRC, Companies House, and a maze of filing deadlines. Most founders discover accounting gaps only when penalties arrive or investors request clean books.
This guide provides a 30–90 day operating system for startup accounting and bookkeeping. You'll get cadence tables, document checklists, monthly close procedures, and software selection criteria—everything needed to build repeatable finance operations from day one.
TL;DR: What to Do Today, This Week, This Month
Today :
- Open a dedicated business bank account if you haven't already
- Create a simple spreadsheet tracking cash in, cash out, and current balance
- List all business expenses from the past 30 days with receipts
This week:
- Reconcile your bank account (match transactions to receipts)
- Set up a digital folder structure for invoices, receipts, contracts, and payroll records
- Review your VAT position—are you approaching £90,000 in taxable turnover?
This month:
- Choose accounting software or engage a bookkeeper (see selection criteria below)
- Establish a monthly close routine (target: complete within 5–7 working days after month-end)
- Document your chart of accounts and expense categories for consistency
30/60/90-Day Startup Accounting Checklist
Days 1–30: Foundation
Must have:
- Business bank account opened and active
- Basic bookkeeping system established (software or spreadsheet)
- Receipt capture method implemented (photo app, email folder, or software integration)
- Chart of accounts created with consistent expense categories
- Weekly cash position tracking started (cash in bank + runway estimate)
Should have:
- Accounting software selected and connected to bank feed
- Expense policy drafted (approval limits, evidence requirements, reimbursement process)
- Payroll provider engaged if you have employees
- VAT threshold monitoring process established
Nice to have:
- Invoice template created with compliant numbering
- Financial dashboard with 3–5 key metrics
- Cloud storage organized by financial year and category
Days 31–60: Repeatability
Must have:
- First month-end close completed (P&L and balance sheet produced)
- Bank reconciliation performed and documented
- All supplier invoices logged and matched to bank transactions
- Payroll records filed (if applicable)
- Cash flow forecast created for next 90 days
Should have:
- Month-end close procedure documented (who does what, by when)
- Expense approval workflow implemented
- Customer invoicing cadence established (terms, follow-up, aging report)
- Financial reporting calendar created (board, investors, internal)
Nice to have:
- Automated bank feeds and transaction categorization rules
- Integration between invoicing and accounting software
- Monthly financial commentary template (narrative explaining key movements)
Days 61–90: Control and Visibility
Must have:
- Two consecutive month-ends closed within 5–7 working days
- Runway calculation method standardized
- Companies House confirmation statement requirements understood
- Corporation Tax payment date identified and diarized
Should have:
- Quarterly financial review scheduled (actual vs budget/forecast)
- Investor reporting pack template created (if fundraising or funded)
- Key financial controls documented (who can approve spending, payment authorization levels)
- Year-end planning started (accountant engagement, audit requirements if applicable)
Nice to have:
- Benchmarking data collected (unit economics, burn multiples, comparable metrics)
- Financial scenario models built (best case, base case, worst case)
- Integration with operational data (customer counts, user metrics, pipeline)
Essential Records: What You Must Keep
UK limited companies must retain records for 6 years from the end of the last financial year they relate to. Self-employed individuals must keep records for 5 years after the 31 January submission deadline for that tax year.
Core Document Categories
| Category | What to Keep | Retention Format | Why It Matters |
| Bank statements | All business accounts, monthly | PDF or paper | Bank reconciliation, audit trail, dispute resolution |
| Sales invoices | Every invoice issued, sequentially numbered | Digital copies with backups | VAT evidence, revenue recognition, customer disputes |
| Purchase invoices | All supplier bills and receipts | Originals or clear digital copies | Expense deductions, VAT reclaim, audit defense |
| Payroll records | FPS submissions, payslips, PAYE calculations, pension contributions | Secure digital archive | HMRC compliance, employment tribunals, pension auto-enrollment evidence |
| VAT records (if registered) | VAT returns, supporting calculations, input/output tax workings | MTD-compliant software + backups | HMRC inspections, VAT disputes, input tax reclaim |
| Contracts | Customer agreements, supplier terms, leases, loan agreements | Signed originals or authenticated PDFs | Dispute resolution, terms enforcement, audit requirements |
| Share records | Cap table, share certificates, option agreements, board minutes | Companies House filings + internal secure storage | Investor verification, exit preparation, option exercises |
| Fixed asset register | Purchase details, depreciation schedules, disposal records | Spreadsheet or software module | Capital allowances, accurate balance sheet, insurance claims |
Evidence Rules for Expenses
HMRC expects "reasonable evidence" that expenses are:
- Wholly and exclusively for business purposes
- Accurately recorded with date, amount, supplier, and business reason
- Supported by documentation (receipt, invoice, or credible alternative if lost)
Minimum acceptable evidence:
- Supplier name and address
- Transaction date
- Description of goods or services
- Amount including VAT (if applicable)
- Payment method confirmation
Digital records: HMRC accepts digital records. Use cloud storage with version control and regular backups. Photo receipts immediately; thermal paper fades within months.
Operating Cadence: Weekly, Monthly, Quarterly Routines
Weekly (20–30 minutes)
| Task | Owner | Output |
| Record cash position | Founder / Finance lead | Current balance, week-on-week change |
| Reconcile transactions | Bookkeeper / Finance lead | Bank feed reviewed, categorized, unmatched items flagged |
| Review overdue invoices | Founder / Sales lead | Aged receivables list, follow-up actions identified |
| Log new expenses | All team members with spend | Receipts uploaded, expense claims submitted |
| Check upcoming payments | Finance lead | Next 7 days' cash out, payment approvals confirmed |
Founder/CEO focus: Know your cash position and runway every Monday morning.
Solo founder hack: Block 20 minutes every Friday. Open your accounting software, categorize the week's transactions, and note your closing cash balance.
Monthly (half-day to full day, Days 1–7 after month-end)
| Day | Task | Owner | Output |
| D+1 | Close bank reconciliation | Bookkeeper | All transactions matched, discrepancies investigated |
| D+2 | Finalize supplier invoices | AP / Finance lead | All bills logged, accruals estimated |
| D+3 | Complete revenue recognition | AR / Finance lead | All customer invoices raised, revenue cut-off applied |
| D+4 | Process payroll and PAYE | Payroll provider / HR | FPS submitted, payslips issued, journals posted |
| D+5 | Run month-end reports | Bookkeeper / Finance lead | P&L, balance sheet, cash flow statement |
| D+6 | Review and adjust | Finance lead / CFO | Errors corrected, unusual items explained |
| D+7 | Distribute reports + commentary | Finance lead | Board pack, investor update, team summary (as applicable) |
Target: Close your books within 5–7 working days. Faster closes improve decision-making and signal operational maturity to investors.
Quarterly (1–2 days)
| Task | Owner | Output |
| Financial review vs budget/forecast | CFO / Finance lead | Variance analysis, explanation of key movements |
| Update cash flow forecast (rolling 12 months) | Finance lead | Revised burn rate, runway, funding requirement |
| Review and update financial controls | CFO / COO | Expense policy, approval limits, segregation of duties |
| Plan next quarter's budget | Leadership team | Headcount, marketing spend, capital expenditure |
| VAT return preparation and filing (if registered) | Bookkeeper / Accountant | MTD submission, payment arranged |
| Payroll and pension compliance check | HR / Payroll provider | Auto-enrollment duties, P11D preparation (if relevant) |
Monthly Close SOP: Steps and Outputs
A repeatable month-end close protects you from surprises, enables accurate reporting, and demonstrates financial discipline to investors.
Pre-Close Preparation (last 3 days of month)
- Send reminders to team members: submit expenses and timesheets by month-end
- Chase outstanding invoices due within the month
- Review upcoming supplier bills expected in the first few days of next month
- Identify any accruals or prepayments that need adjusting (e.g., SaaS subscriptions billed quarterly)
Close Procedure (Days 1–7)
Step 1: Bank Reconciliation (D+1)
- Download bank statements for all business accounts
- Match every transaction in accounting software to bank feed
- Investigate and resolve unmatched items (missing receipts, duplicate entries, timing differences)
- Confirm opening and closing balances agree to bank statements
Step 2: Accounts Payable (D+2)
- Log all supplier invoices received
- Ensure bills dated in the closed month are recorded (even if unpaid)
- Estimate accruals for services received but not yet invoiced (e.g., utilities, consulting)
- Review prepayments (advance payments for next month's services)
Step 3: Accounts Receivable (D+3)
- Raise all customer invoices for services delivered or goods shipped in the month
- Apply correct revenue recognition rules (especially for multi-month contracts or milestones)
- Update aged receivables report
- Write off or provide for any bad debts
Step 4: Payroll (D+4)
- Process monthly payroll if applicable
- Submit RTI Full Payment Submission (FPS) to HMRC on or before payday
- Record payroll journals (gross wages, tax, NI, pensions, net pay)
- File payslips and confirm pension contributions remitted
Step 5: Run Reports (D+5)
- Generate profit and loss statement (P&L)
- Generate balance sheet
- Generate cash flow statement (if required)
- Run subsidiary reports: aged receivables, aged payables, expense breakdown by category
Step 6: Review and Adjust (D+6)
- Check for obvious errors (duplicate transactions, mis-categorized expenses, missing invoices)
- Investigate unusual variances vs prior month or budget
- Correct errors and re-run reports
- Document key assumptions and estimates (accruals, prepayments, non-cash adjustments)
Step 7: Distribute and Commentary (D+7)
- Prepare one-page financial summary with:
- Cash position and movement
- Revenue and key expense lines
- Runway estimate
- 2–3 sentence narrative explaining key changes
- Circulate to stakeholders (founders, board, investors as appropriate)
- File reports and close the month in your accounting system
What "Good" Looks Like
Founder/CEO readiness:
- Month closed in 5–7 days consistently
- No "placeholder" or "to be confirmed" line items in reports
- Clear narrative explaining why cash, revenue, or expenses moved significantly
- Confidence to answer investor questions about any line item
Ops/Finance lead readiness:
- Documented procedures that anyone can follow
- RACI chart (Responsible, Accountable, Consulted, Informed) for each close task
- Error log tracking mistakes and process improvements month-on-month
- Time tracking: know how long each step takes, optimize over time
Choosing Software vs Services: Selection Criteria
Most UK startups use a combination: accounting software for transaction recording plus periodic or ongoing support from a bookkeeper or accountant.
Decision Framework
| Your Situation | Recommended Approach | Estimated Cost |
| Solo founder, < 20 transactions/month | DIY with simple software + annual accountant for year-end and tax | £15–30/month software + £500–1,500 annual accountant |
| Founder + 1–2 employees, 20–100 transactions/month | Software + monthly bookkeeper review (2–4 hours/month) | £30–50/month software + £150–400/month bookkeeper |
| 5–15 employees, raising funds or investor-backed | Software + fractional finance lead or outsourced finance function | £50–100/month software + £800–2,500/month for outsourced support |
| 15–50 employees, multiple revenue streams, VAT registered | Mid-tier software + in-house finance hire or fractional CFO | £100–300/month software + £40k–70k annual salary or £2k–5k/month fractional |
Accounting Software Selection Scorecard
| Criteria | Why It Matters | What to Check |
| MTD for VAT compliance | Mandatory if VAT registered | Software must be on HMRC's approved list |
| Bank feed reliability | Saves hours of manual entry | Check integration with your bank; some require Open Banking authorization |
| Invoice and expense capture | Speeds up data entry | Mobile app for receipt photos; email forwarding for supplier invoices |
| Multi-currency support | Essential if selling overseas or paying foreign contractors | Real-time FX rates, multi-currency bank accounts |
| Payroll integration | Reduces double entry and errors | Direct integration or API connection to payroll provider |
| User permissions and controls | Protects sensitive data | Role-based access (bookkeeper, accountant, view-only for founders) |
| Reporting flexibility | Supports board packs and investor updates | Customizable P&L, cash flow, dashboard; export to Excel/Google Sheets |
| Scalability | Avoids switching costs later | Can it handle 10x transaction volume? Multiple entities? Consolidation? |
| Accountant/bookkeeper access | Most accountants have preferred platforms | Check if your accountant already uses the software; reduces friction |
| Price and contract terms | Budget predictability | Monthly vs annual billing; price increases as you grow; exit policy |
Popular UK startup options: Xero, QuickBooks Online, FreeAgent (self-employed and micro-companies), Sage Accounting. Evaluate based on your scorecard.
When to Hire a Bookkeeper vs Accountant vs CFO
Bookkeeper: Day-to-day transaction recording, bank reconciliation, invoicing, expense management. Typically engaged monthly (few hours) or ongoing (fractional).
Accountant: Year-end accounts, Corporation Tax return, tax planning, statutory compliance (Companies House filings). Typically engaged annually or quarterly.
Fractional CFO / Finance Lead: Strategic finance (fundraising, budgeting, forecasting, KPIs, board reporting, investor relations, financial modeling). Typically 1–3 days/month at early stage, scaling with complexity.
Solo founder rule of thumb: Do your own bookkeeping until it takes more than 4 hours/month or you make repeated errors. Outsource before it becomes painful.
Common Startup Accounting Mistakes and How to Avoid Them
Mistake 1: Mixing Personal and Business Finances
Consequence: HMRC disputes over expense claims; difficult bank reconciliation; poor cash visibility; risk of piercing the corporate veil.
Prevention:
- Open a dedicated business bank account on day one
- Use a business credit card for all company spending
- Reimburse yourself formally for any personal card use (with receipts and expense claim)
- Transfer a regular "salary" or dividend to yourself rather than ad-hoc withdrawals
Mistake 2: Ignoring VAT Registration Threshold
Consequence: Late registration penalty (up to 15% of VAT due); loss of input VAT reclaim; retrospective VAT liability.
Prevention:
- Monitor rolling 12-month taxable turnover monthly
- Register within 30 days of the month-end when you exceed £90,000
- Register immediately if you expect to exceed £90,000 in the next 30 days alone
- Consider voluntary registration if your customers are VAT-registered (you can reclaim input VAT)
Context: With 801,864 incorporations in the UK from April 2024 to March 2025, many startups cross the £90,000 threshold faster than expected. Build VAT monitoring into your monthly close.
Mistake 3: Poor Expense Categorization
Consequence: Incorrect tax deductions; inability to analyze spending patterns; weak budget variance analysis; investor confusion.
Prevention:
- Create a chart of accounts with clear category definitions (written guide, 1–2 sentences per category)
- Train anyone with spending authority on categories
- Review miscellaneous or "other" categories monthly; if they grow above 5% of expenses, split into specific categories
- Use consistent vendor names (avoid "Amazon" in 10 different ways)
Mistake 4: Forgetting to Record Accruals and Prepayments
Consequence: P&L doesn't reflect true monthly performance; cash flow timing masks underlying profitability; impossible to compare month-on-month accurately.
Prevention:
- Identify recurring expenses that don't align with month boundaries (annual SaaS subscriptions, quarterly rent, insurance)
- At month-end, record an accrual for expenses incurred but not yet billed (e.g., consulting hours worked, utility bills in arrears)
- Record a prepayment for advance payments (spread the cost over the period it relates to)
- Document your accrual and prepayment policy; apply consistently
Example: You pay £1,200 annual SaaS subscription in January. Record £100/month expense, not £1,200 in January. Your January P&L should show £100; your balance sheet shows £1,100 prepayment asset that reduces £100 each month.
Mistake 5: Late or Missed Statutory Filings
Consequence: Automatic penalties; director disqualification risk; damaged credit rating; loss of investor confidence.
Prevention:
- Diarize all deadlines 4–6 weeks in advance:
- Annual accounts: 9 months after year-end (21 months for first accounts)
- Corporation Tax return: 12 months after accounting period ends
- Corporation Tax payment: 9 months and 1 day after accounting period ends
- Confirmation statement: At least annually, within 14 days after review period
- Self Assessment (if applicable): 31 January following tax year
- VAT returns (if registered): Quarterly, 1 month and 7 days after quarter-end
- Use accounting software or calendar reminders with escalating alerts
- Engage an accountant if you're not confident managing deadlines yourself
UK context: Late filing penalties for private limited companies start at £150 and reach £1,500, doubling for repeat offenders. With 726,735 dissolutions from April 2024 to March 2025, many failures stem from compliance breakdowns.
Mistake 6: No Monthly Close Discipline
Consequence: No visibility into financial health; unable to forecast accurately; reactive rather than proactive decisions; weak investor updates.
Prevention:
- Implement the monthly close SOP above
- Set a target: close within 5–7 working days
- Track close completion date month-on-month; aim for consistency
- If you miss the target, document why and fix the bottleneck next month
Mistake 7: Failing to Track Runway and Burn Rate
Consequence: Run out of cash unexpectedly; miss fundraising window; forced into unfavorable terms or shutdown.
Prevention:
- Calculate runway weekly: (Cash in bank) ÷ (Average monthly burn rate)
- Define burn rate clearly: cash out minus cash in over the past 30, 60, or 90 days
- Forecast burn rate changes (new hires, marketing campaigns, product launches)
- Set a "fundraising trigger" (e.g., 9 months runway remaining) and plan accordingly
Ops/Finance lead variation: Build a 13-week rolling cash flow forecast. Update weekly. Scenario-plan for delayed customer payments, faster hiring, or unexpected expenses.
Mistake 8: Inadequate Financial Controls
Consequence: Fraud risk; unauthorized spending; duplicate payments; lack of accountability.
Prevention:
- Document expense approval limits (e.g., < £500 team lead approval, £500–5k founder approval, > £5k board approval)
- Require two signatories or approval steps for payments above a threshold
- Separate duties: person recording expenses ≠ person approving payments
- Conduct spot checks on expense claims and vendor invoices
- Review all bank transactions monthly; investigate anything unusual
UK Compliance Calendar: Key Deadlines
Annual and Recurring Deadlines
| Obligation | Deadline | Penalty for Late | Notes |
| Annual accounts filing (Companies House) | 9 months after year-end (21 months for first accounts) | £150 to £1,500; doubles for repeat offenders | Micro-entities (2 of 3: turnover ≤ £1m, balance sheet ≤ £500k, ≤ 10 employees) can file simplified accounts |
| Corporation Tax return | 12 months after accounting period ends | £100 initial penalty, escalating to £500+ | Filed via HMRC online |
| Corporation Tax payment | 9 months and 1 day after accounting period ends | Interest charged on late payment | Payment separate from return deadline |
| Confirmation statement | Annually (at least), within 14 days after review period | £150 standard penalty | Confirms company details; required even if no changes |
| Self Assessment return (self-employed / directors with > £100k income) | 31 January following tax year | £100 immediate, then £10/day (max £900), more at 6 and 12 months | Online filing deadline; paper deadline is earlier (31 Oct) |
| VAT return (if registered) | 1 month and 7 days after quarter-end | Default surcharge; can lead to registration cancellation | Must use MTD-compliant software |
| RTI payroll (FPS) | On or before each payday | Penalties accumulate; HMRC can issue compliance notices | Required even for single employee |
Quarterly VAT Periods (Standard)
Most businesses use calendar quarters or stagger based on incorporation:
- Q1: Jan–Mar (due 7 May)
- Q2: Apr–Jun (due 7 Aug)
- Q3: Jul–Sep (due 7 Nov)
- Q4: Oct–Dec (due 7 Feb)
If you register for VAT partway through a quarter, your first period may be shorter. HMRC assigns your quarters when you register.
Payroll and PAYE (if employing)
- FPS (Full Payment Submission): On or before every payday
- EPS (Employer Payment Summary): If claiming Employment Allowance or reporting no payment due
- PAYE/NIC payment to HMRC: 22nd of the month following pay period (19th if paying by post)
- Year-end forms (P60, P11D if applicable): P60 by 31 May; P11D by 6 July
Auto-enrollment pensions: Contributions due by 22nd of the month following deduction (or 19th by post).
This article provides educational guidance on startup accounting and bookkeeping in the UK. It is not personalized tax, legal, or financial advice. Regulations and deadlines change; always verify current requirements with HMRC, Companies House, or a qualified accountant. Consult a professional advisor for decisions specific to your business at Audit Consulting Group.









