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Startup Accounting & Bookkeeping Services UK: The Complete Operating Guide

Jan 19, 2026 | By Team SR

Running a UK startup means juggling product development, customer acquisition, and team building—while staying compliant with HMRC, Companies House, and a maze of filing deadlines. Most founders discover accounting gaps only when penalties arrive or investors request clean books.

This guide provides a 30–90 day operating system for startup accounting and bookkeeping. You'll get cadence tables, document checklists, monthly close procedures, and software selection criteria—everything needed to build repeatable finance operations from day one.

TL;DR: What to Do Today, This Week, This Month

Today :

  • Open a dedicated business bank account if you haven't already
  • Create a simple spreadsheet tracking cash in, cash out, and current balance
  • List all business expenses from the past 30 days with receipts

This week:

  • Reconcile your bank account (match transactions to receipts)
  • Set up a digital folder structure for invoices, receipts, contracts, and payroll records
  • Review your VAT position—are you approaching £90,000 in taxable turnover?

This month:

  • Choose accounting software or engage a bookkeeper (see selection criteria below)
  • Establish a monthly close routine (target: complete within 5–7 working days after month-end)
  • Document your chart of accounts and expense categories for consistency

30/60/90-Day Startup Accounting Checklist

Days 1–30: Foundation

Must have:

  •  Business bank account opened and active
  •  Basic bookkeeping system established (software or spreadsheet)
  •  Receipt capture method implemented (photo app, email folder, or software integration)
  •  Chart of accounts created with consistent expense categories
  •  Weekly cash position tracking started (cash in bank + runway estimate)

Should have:

  •  Accounting software selected and connected to bank feed
  •  Expense policy drafted (approval limits, evidence requirements, reimbursement process)
  •  Payroll provider engaged if you have employees
  •  VAT threshold monitoring process established

Nice to have:

  •  Invoice template created with compliant numbering
  •  Financial dashboard with 3–5 key metrics
  •  Cloud storage organized by financial year and category

Days 31–60: Repeatability

Must have:

  •  First month-end close completed (P&L and balance sheet produced)
  •  Bank reconciliation performed and documented
  •  All supplier invoices logged and matched to bank transactions
  •  Payroll records filed (if applicable)
  •  Cash flow forecast created for next 90 days

Should have:

  •  Month-end close procedure documented (who does what, by when)
  •  Expense approval workflow implemented
  •  Customer invoicing cadence established (terms, follow-up, aging report)
  •  Financial reporting calendar created (board, investors, internal)

Nice to have:

  •  Automated bank feeds and transaction categorization rules
  •  Integration between invoicing and accounting software
  •  Monthly financial commentary template (narrative explaining key movements)

Days 61–90: Control and Visibility

Must have:

  •  Two consecutive month-ends closed within 5–7 working days
  •  Runway calculation method standardized
  •  Companies House confirmation statement requirements understood
  •  Corporation Tax payment date identified and diarized

Should have:

  •  Quarterly financial review scheduled (actual vs budget/forecast)
  •  Investor reporting pack template created (if fundraising or funded)
  •  Key financial controls documented (who can approve spending, payment authorization levels)
  •  Year-end planning started (accountant engagement, audit requirements if applicable)

Nice to have:

  •  Benchmarking data collected (unit economics, burn multiples, comparable metrics)
  •  Financial scenario models built (best case, base case, worst case)
  •  Integration with operational data (customer counts, user metrics, pipeline)

Essential Records: What You Must Keep

UK limited companies must retain records for 6 years from the end of the last financial year they relate to. Self-employed individuals must keep records for 5 years after the 31 January submission deadline for that tax year.

Core Document Categories

CategoryWhat to KeepRetention FormatWhy It Matters
Bank statementsAll business accounts, monthlyPDF or paperBank reconciliation, audit trail, dispute resolution
Sales invoicesEvery invoice issued, sequentially numberedDigital copies with backupsVAT evidence, revenue recognition, customer disputes
Purchase invoicesAll supplier bills and receiptsOriginals or clear digital copiesExpense deductions, VAT reclaim, audit defense
Payroll recordsFPS submissions, payslips, PAYE calculations, pension contributionsSecure digital archiveHMRC compliance, employment tribunals, pension auto-enrollment evidence
VAT records (if registered)VAT returns, supporting calculations, input/output tax workingsMTD-compliant software + backupsHMRC inspections, VAT disputes, input tax reclaim
ContractsCustomer agreements, supplier terms, leases, loan agreementsSigned originals or authenticated PDFsDispute resolution, terms enforcement, audit requirements
Share recordsCap table, share certificates, option agreements, board minutesCompanies House filings + internal secure storageInvestor verification, exit preparation, option exercises
Fixed asset registerPurchase details, depreciation schedules, disposal recordsSpreadsheet or software moduleCapital allowances, accurate balance sheet, insurance claims

Evidence Rules for Expenses

HMRC expects "reasonable evidence" that expenses are:

  • Wholly and exclusively for business purposes
  • Accurately recorded with date, amount, supplier, and business reason
  • Supported by documentation (receipt, invoice, or credible alternative if lost)

Minimum acceptable evidence:

  • Supplier name and address
  • Transaction date
  • Description of goods or services
  • Amount including VAT (if applicable)
  • Payment method confirmation

Digital records: HMRC accepts digital records. Use cloud storage with version control and regular backups. Photo receipts immediately; thermal paper fades within months.

Operating Cadence: Weekly, Monthly, Quarterly Routines

Weekly (20–30 minutes)

TaskOwnerOutput
Record cash positionFounder / Finance leadCurrent balance, week-on-week change
Reconcile transactionsBookkeeper / Finance leadBank feed reviewed, categorized, unmatched items flagged
Review overdue invoicesFounder / Sales leadAged receivables list, follow-up actions identified
Log new expensesAll team members with spendReceipts uploaded, expense claims submitted
Check upcoming paymentsFinance leadNext 7 days' cash out, payment approvals confirmed

Founder/CEO focus: Know your cash position and runway every Monday morning.

Solo founder hack: Block 20 minutes every Friday. Open your accounting software, categorize the week's transactions, and note your closing cash balance.

Monthly (half-day to full day, Days 1–7 after month-end)

DayTaskOwnerOutput
D+1Close bank reconciliationBookkeeperAll transactions matched, discrepancies investigated
D+2Finalize supplier invoicesAP / Finance leadAll bills logged, accruals estimated
D+3Complete revenue recognitionAR / Finance leadAll customer invoices raised, revenue cut-off applied
D+4Process payroll and PAYEPayroll provider / HRFPS submitted, payslips issued, journals posted
D+5Run month-end reportsBookkeeper / Finance leadP&L, balance sheet, cash flow statement
D+6Review and adjustFinance lead / CFOErrors corrected, unusual items explained
D+7Distribute reports + commentaryFinance leadBoard pack, investor update, team summary (as applicable)

Target: Close your books within 5–7 working days. Faster closes improve decision-making and signal operational maturity to investors.

Quarterly (1–2 days)

TaskOwnerOutput
Financial review vs budget/forecastCFO / Finance leadVariance analysis, explanation of key movements
Update cash flow forecast (rolling 12 months)Finance leadRevised burn rate, runway, funding requirement
Review and update financial controlsCFO / COOExpense policy, approval limits, segregation of duties
Plan next quarter's budgetLeadership teamHeadcount, marketing spend, capital expenditure
VAT return preparation and filing (if registered)Bookkeeper / AccountantMTD submission, payment arranged
Payroll and pension compliance checkHR / Payroll providerAuto-enrollment duties, P11D preparation (if relevant)

Monthly Close SOP: Steps and Outputs

A repeatable month-end close protects you from surprises, enables accurate reporting, and demonstrates financial discipline to investors.

Pre-Close Preparation (last 3 days of month)

  1. Send reminders to team members: submit expenses and timesheets by month-end
  2. Chase outstanding invoices due within the month
  3. Review upcoming supplier bills expected in the first few days of next month
  4. Identify any accruals or prepayments that need adjusting (e.g., SaaS subscriptions billed quarterly)

Close Procedure (Days 1–7)

Step 1: Bank Reconciliation (D+1)

  • Download bank statements for all business accounts
  • Match every transaction in accounting software to bank feed
  • Investigate and resolve unmatched items (missing receipts, duplicate entries, timing differences)
  • Confirm opening and closing balances agree to bank statements

Step 2: Accounts Payable (D+2)

  • Log all supplier invoices received
  • Ensure bills dated in the closed month are recorded (even if unpaid)
  • Estimate accruals for services received but not yet invoiced (e.g., utilities, consulting)
  • Review prepayments (advance payments for next month's services)

Step 3: Accounts Receivable (D+3)

  • Raise all customer invoices for services delivered or goods shipped in the month
  • Apply correct revenue recognition rules (especially for multi-month contracts or milestones)
  • Update aged receivables report
  • Write off or provide for any bad debts

Step 4: Payroll (D+4)

  • Process monthly payroll if applicable
  • Submit RTI Full Payment Submission (FPS) to HMRC on or before payday
  • Record payroll journals (gross wages, tax, NI, pensions, net pay)
  • File payslips and confirm pension contributions remitted

Step 5: Run Reports (D+5)

  • Generate profit and loss statement (P&L)
  • Generate balance sheet
  • Generate cash flow statement (if required)
  • Run subsidiary reports: aged receivables, aged payables, expense breakdown by category

Step 6: Review and Adjust (D+6)

  • Check for obvious errors (duplicate transactions, mis-categorized expenses, missing invoices)
  • Investigate unusual variances vs prior month or budget
  • Correct errors and re-run reports
  • Document key assumptions and estimates (accruals, prepayments, non-cash adjustments)

Step 7: Distribute and Commentary (D+7)

  • Prepare one-page financial summary with:
    • Cash position and movement
    • Revenue and key expense lines
    • Runway estimate
    • 2–3 sentence narrative explaining key changes
  • Circulate to stakeholders (founders, board, investors as appropriate)
  • File reports and close the month in your accounting system

What "Good" Looks Like

Founder/CEO readiness:

  • Month closed in 5–7 days consistently
  • No "placeholder" or "to be confirmed" line items in reports
  • Clear narrative explaining why cash, revenue, or expenses moved significantly
  • Confidence to answer investor questions about any line item

Ops/Finance lead readiness:

  • Documented procedures that anyone can follow
  • RACI chart (Responsible, Accountable, Consulted, Informed) for each close task
  • Error log tracking mistakes and process improvements month-on-month
  • Time tracking: know how long each step takes, optimize over time

Choosing Software vs Services: Selection Criteria

Most UK startups use a combination: accounting software for transaction recording plus periodic or ongoing support from a bookkeeper or accountant.

Decision Framework

Your SituationRecommended ApproachEstimated Cost
Solo founder, < 20 transactions/monthDIY with simple software + annual accountant for year-end and tax£15–30/month software + £500–1,500 annual accountant
Founder + 1–2 employees, 20–100 transactions/monthSoftware + monthly bookkeeper review (2–4 hours/month)£30–50/month software + £150–400/month bookkeeper
5–15 employees, raising funds or investor-backedSoftware + fractional finance lead or outsourced finance function£50–100/month software + £800–2,500/month for outsourced support
15–50 employees, multiple revenue streams, VAT registeredMid-tier software + in-house finance hire or fractional CFO£100–300/month software + £40k–70k annual salary or £2k–5k/month fractional

Accounting Software Selection Scorecard

CriteriaWhy It MattersWhat to Check
MTD for VAT complianceMandatory if VAT registeredSoftware must be on HMRC's approved list
Bank feed reliabilitySaves hours of manual entryCheck integration with your bank; some require Open Banking authorization
Invoice and expense captureSpeeds up data entryMobile app for receipt photos; email forwarding for supplier invoices
Multi-currency supportEssential if selling overseas or paying foreign contractorsReal-time FX rates, multi-currency bank accounts
Payroll integrationReduces double entry and errorsDirect integration or API connection to payroll provider
User permissions and controlsProtects sensitive dataRole-based access (bookkeeper, accountant, view-only for founders)
Reporting flexibilitySupports board packs and investor updatesCustomizable P&L, cash flow, dashboard; export to Excel/Google Sheets
ScalabilityAvoids switching costs laterCan it handle 10x transaction volume? Multiple entities? Consolidation?
Accountant/bookkeeper accessMost accountants have preferred platformsCheck if your accountant already uses the software; reduces friction
Price and contract termsBudget predictabilityMonthly vs annual billing; price increases as you grow; exit policy

Popular UK startup options: Xero, QuickBooks Online, FreeAgent (self-employed and micro-companies), Sage Accounting. Evaluate based on your scorecard.

When to Hire a Bookkeeper vs Accountant vs CFO

Bookkeeper: Day-to-day transaction recording, bank reconciliation, invoicing, expense management. Typically engaged monthly (few hours) or ongoing (fractional).

Accountant: Year-end accounts, Corporation Tax return, tax planning, statutory compliance (Companies House filings). Typically engaged annually or quarterly.

Fractional CFO / Finance Lead: Strategic finance (fundraising, budgeting, forecasting, KPIs, board reporting, investor relations, financial modeling). Typically 1–3 days/month at early stage, scaling with complexity.

Solo founder rule of thumb: Do your own bookkeeping until it takes more than 4 hours/month or you make repeated errors. Outsource before it becomes painful.

Common Startup Accounting Mistakes and How to Avoid Them

Mistake 1: Mixing Personal and Business Finances

Consequence: HMRC disputes over expense claims; difficult bank reconciliation; poor cash visibility; risk of piercing the corporate veil.

Prevention:

  • Open a dedicated business bank account on day one
  • Use a business credit card for all company spending
  • Reimburse yourself formally for any personal card use (with receipts and expense claim)
  • Transfer a regular "salary" or dividend to yourself rather than ad-hoc withdrawals

Mistake 2: Ignoring VAT Registration Threshold

Consequence: Late registration penalty (up to 15% of VAT due); loss of input VAT reclaim; retrospective VAT liability.

Prevention:

  • Monitor rolling 12-month taxable turnover monthly
  • Register within 30 days of the month-end when you exceed £90,000
  • Register immediately if you expect to exceed £90,000 in the next 30 days alone
  • Consider voluntary registration if your customers are VAT-registered (you can reclaim input VAT)

Context: With 801,864 incorporations in the UK from April 2024 to March 2025, many startups cross the £90,000 threshold faster than expected. Build VAT monitoring into your monthly close.

Mistake 3: Poor Expense Categorization

Consequence: Incorrect tax deductions; inability to analyze spending patterns; weak budget variance analysis; investor confusion.

Prevention:

  • Create a chart of accounts with clear category definitions (written guide, 1–2 sentences per category)
  • Train anyone with spending authority on categories
  • Review miscellaneous or "other" categories monthly; if they grow above 5% of expenses, split into specific categories
  • Use consistent vendor names (avoid "Amazon" in 10 different ways)

Mistake 4: Forgetting to Record Accruals and Prepayments

Consequence: P&L doesn't reflect true monthly performance; cash flow timing masks underlying profitability; impossible to compare month-on-month accurately.

Prevention:

  • Identify recurring expenses that don't align with month boundaries (annual SaaS subscriptions, quarterly rent, insurance)
  • At month-end, record an accrual for expenses incurred but not yet billed (e.g., consulting hours worked, utility bills in arrears)
  • Record a prepayment for advance payments (spread the cost over the period it relates to)
  • Document your accrual and prepayment policy; apply consistently

Example: You pay £1,200 annual SaaS subscription in January. Record £100/month expense, not £1,200 in January. Your January P&L should show £100; your balance sheet shows £1,100 prepayment asset that reduces £100 each month.

Mistake 5: Late or Missed Statutory Filings

Consequence: Automatic penalties; director disqualification risk; damaged credit rating; loss of investor confidence.

Prevention:

  • Diarize all deadlines 4–6 weeks in advance:
    • Annual accounts: 9 months after year-end (21 months for first accounts)
    • Corporation Tax return: 12 months after accounting period ends
    • Corporation Tax payment: 9 months and 1 day after accounting period ends
    • Confirmation statement: At least annually, within 14 days after review period
    • Self Assessment (if applicable): 31 January following tax year
    • VAT returns (if registered): Quarterly, 1 month and 7 days after quarter-end
  • Use accounting software or calendar reminders with escalating alerts
  • Engage an accountant if you're not confident managing deadlines yourself

UK context: Late filing penalties for private limited companies start at £150 and reach £1,500, doubling for repeat offenders. With 726,735 dissolutions from April 2024 to March 2025, many failures stem from compliance breakdowns.

Mistake 6: No Monthly Close Discipline

Consequence: No visibility into financial health; unable to forecast accurately; reactive rather than proactive decisions; weak investor updates.

Prevention:

  • Implement the monthly close SOP above
  • Set a target: close within 5–7 working days
  • Track close completion date month-on-month; aim for consistency
  • If you miss the target, document why and fix the bottleneck next month

Mistake 7: Failing to Track Runway and Burn Rate

Consequence: Run out of cash unexpectedly; miss fundraising window; forced into unfavorable terms or shutdown.

Prevention:

  • Calculate runway weekly: (Cash in bank) ÷ (Average monthly burn rate)
  • Define burn rate clearly: cash out minus cash in over the past 30, 60, or 90 days
  • Forecast burn rate changes (new hires, marketing campaigns, product launches)
  • Set a "fundraising trigger" (e.g., 9 months runway remaining) and plan accordingly

Ops/Finance lead variation: Build a 13-week rolling cash flow forecast. Update weekly. Scenario-plan for delayed customer payments, faster hiring, or unexpected expenses.

Mistake 8: Inadequate Financial Controls

Consequence: Fraud risk; unauthorized spending; duplicate payments; lack of accountability.

Prevention:

  • Document expense approval limits (e.g., < £500 team lead approval, £500–5k founder approval, > £5k board approval)
  • Require two signatories or approval steps for payments above a threshold
  • Separate duties: person recording expenses ≠ person approving payments
  • Conduct spot checks on expense claims and vendor invoices
  • Review all bank transactions monthly; investigate anything unusual

UK Compliance Calendar: Key Deadlines

Annual and Recurring Deadlines

ObligationDeadlinePenalty for LateNotes
Annual accounts filing (Companies House)9 months after year-end (21 months for first accounts)£150 to £1,500; doubles for repeat offendersMicro-entities (2 of 3: turnover ≤ £1m, balance sheet ≤ £500k, ≤ 10 employees) can file simplified accounts
Corporation Tax return12 months after accounting period ends£100 initial penalty, escalating to £500+Filed via HMRC online
Corporation Tax payment9 months and 1 day after accounting period endsInterest charged on late paymentPayment separate from return deadline
Confirmation statementAnnually (at least), within 14 days after review period£150 standard penaltyConfirms company details; required even if no changes
Self Assessment return (self-employed / directors with > £100k income)31 January following tax year£100 immediate, then £10/day (max £900), more at 6 and 12 monthsOnline filing deadline; paper deadline is earlier (31 Oct)
VAT return (if registered)1 month and 7 days after quarter-endDefault surcharge; can lead to registration cancellationMust use MTD-compliant software
RTI payroll (FPS)On or before each paydayPenalties accumulate; HMRC can issue compliance noticesRequired even for single employee

Quarterly VAT Periods (Standard)

Most businesses use calendar quarters or stagger based on incorporation:

  • Q1: Jan–Mar (due 7 May)
  • Q2: Apr–Jun (due 7 Aug)
  • Q3: Jul–Sep (due 7 Nov)
  • Q4: Oct–Dec (due 7 Feb)

If you register for VAT partway through a quarter, your first period may be shorter. HMRC assigns your quarters when you register.

Payroll and PAYE (if employing)

  • FPS (Full Payment Submission): On or before every payday
  • EPS (Employer Payment Summary): If claiming Employment Allowance or reporting no payment due
  • PAYE/NIC payment to HMRC: 22nd of the month following pay period (19th if paying by post)
  • Year-end forms (P60, P11D if applicable): P60 by 31 May; P11D by 6 July

Auto-enrollment pensions: Contributions due by 22nd of the month following deduction (or 19th by post).

This article provides educational guidance on startup accounting and bookkeeping in the UK. It is not personalized tax, legal, or financial advice. Regulations and deadlines change; always verify current requirements with HMRC, Companies House, or a qualified accountant. Consult a professional advisor for decisions specific to your business at Audit Consulting Group.

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